Biophysics

Sunday, September 10, 2006

Virtual Journals

Virtual Journals

1. Virtual Journals in Science and Technology

2. Frontiers in Bioscience

3. Virtual Journal of Biological Physics Research

4. Virtual Journal for Biomedical Optics

5. Lund Virtual Medical Journal

6. Virtual Journal of Clinical Orthodontics

7. Virtual Journal of Geobiology

8. Virtual Journal of Nanoscale Science & Technology

9. IPAP Virtual Journal in Physics

10. Virtual Journal of Applications of Superconductivity

11. Virtual Journal of Quantum Information

12. Virtual Journal of Nuclear Astrophysics

13. JoVE: Journal of Visualized Experiments

เขียนโดย Biophysics ที่ 7:28 PM

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Free Software

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Cell Division


A science education, computer animation of bacteria / cell division / as it grows exponentially. Brad Freese 18 sec - Jan 19, 2006

Membrane Simulation: Cell Division


This is a project for Principles of Modern Biology at Olin College. Each membrane is a mass-spring system which rests on top of a diffusion gradient. Both diffusion and inter-lipid forces cause the membrane to change shape. We approximate intra-cellular activity by adding concentration inside the cell. When the membrane reaches a critical size, it begins to divide. The simulation was writting in Python using PyGame. Team Threeve/Dork Sword 11 sec - Dec 16, 2005 www.olin.edu

Evolution of cell population in a lymph node section


Evolution of lattice structure (Lymph node section). Pink cells are Th2, light blue are Th1, light red are naïve T cells, dark red are Th0, green represents naïve B cells with a few activated ones, dark blue colour is for macrophages. The surface represented is 1,7mm x 1,7mm master's thesis work. Keywords: immunology, system biology, arthritis, collagen induced arthritis, computer models, simulations. lymphocyte, T cell, B cell, agent based model, individual based model. Nicolas Rapin / medical inflammation research Lund 26 sec - Jun 2, 2005 membres.lycos.fr

Drosophilia


Recent advances in microscopy and in fluorescence labeling of proteins allow the observation of complex biological processes in living organisms. This movie shows the early stages of embryonic development of a fruit fly egg, which is half a millimeter in size. In the first part of the movie, the observation of fluorescently labeled histones (proteins that help packaging the chromosomes into a compact nucleoprotein structure in the cell) reveals the dynamics of the mitotic divisions of the nuclei that occur in the egg during the first two hours of development. Following the synchronous nuclear divisions, cellular membranes form and cell movements initiate a process called gastrulation, during which cells invaginate in the embryo to form tissue layers and organs following a genetically determined developmental program. Early steps of gastrulation are shown in the second part of the movie through fluorescence labeling of membrane proteins. As suggested in the movie by the biophysicist writing down differential reaction-diffusion equations on a blackboard, the ability to observe these kinds of processes at the molecular level and in real time has opened new venues in modern biology, by applying tools from mathematics and physics to understand complex biological processes in a quantitative manner. Jean-Baptiste Boule, Matthieu Coppey, and Thomas G 52 sec - May 13, 2006 www.princeton.edu
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